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  • Breast cancer single-cell whole genome sequencing: BioProject supporting "Novel insights into breast cancer copy number genetic heterogeneity revealed by single-cell genome sequencing"

    Description

    Single-cell genome sequencing of breast cancer. Raw sequence reads from 2,040 SRA experiments based on 18 BioSamples. This data was generated for the study "Novel insights into breast cancer copy number genetic heterogeneity revealed by single-cell genome sequencing." Published in eLife.

    Subject
    Breast Neoplasms
    Whole Genome Sequencing
    Access Rights
    Free to All
  • Listeria seeligeri LS46 and LS59 Genome sequencing and assembly

    Description

    BioProject description: "Genome sequencing of Listeria seeligeri LS46 and LS59". The whole genome sequencing of these listeriaphage enabled researchers to discover that AcrVIA1, an anti-CRISPR protein, interacts with the guide-exposed face of Cas13a, a (crRNA)-guided nuclease, preventing access to the target RNA and the conformational changes required for nuclease activation. A single dose of AcrVIA1...

    Subject
    Listeria
    Sequence Analysis
    Whole Genome Sequencing
    Access Rights
    Free to All
  • Dnmt3a regulates myeloproliferation and liver-specific homing and expansion of hematopoietic stem and progenitor cells (Bisulfite-Seq)

    Authors
    Guryanova, Olga
    Spitzer, Barbara
    Garrett-Bakelman, Francine
    Levine, Ross L.
    Description

    Summary from GEO: "DNMT3A mutations are observed in myeloid malignancies, including myeloproliferative neoplasms (MPN), myelodysplastic syndromes (MDS), and acute myeloid leukemia (AML). Here we investigated the impact of conditional hematopoietic Dnmt3a loss on disease phenotype in primary mice. Dnmt3a ablation led to a lethal, fully penetrant myeloproliferative neoplasm with myelodysplasia (MDS/MPN)...

    Subject
    DNA Methyltransferase 3A
    Hematopoiesis
    Hepatomegaly
    Leukemia, Myeloid, Acute
    Myelodysplastic Syndromes
    Transcriptome
    Whole Genome Sequencing
    Access Rights
    Free to All